C. Elegans: Methods And Applications (Methods in Molecular - download pdf or read online

C. Elegans: Methods And Applications (Methods in Molecular - download pdf or read online

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For installations serving multiple users, a server class machine should be considered. org/docs/INSTALL. html. For convenience, we provide prepackaged files of the database components of WormBase for every release. Currently, this consists of four files: the AceDB database, the C. elegans GFF database, the C. briggsae GFF database, and databases to support the BLAST and BLAT searches. These packages greatly simplify local installations. org /pub/wormbase/mirror/database_tarballs/. The software that drives WormBase can be obtained through several avenues.

Nucleic Acids Res. 32, W199–W203. 41. , Greenberg, J. , and Chamberlin, H. M. (2004) Evolution of regulatory elements producing a conserved gene expression pattern in Caenorhabditis. Evol. Dev. 6, 237–245. 42. Kent, W. J. and Zahler, A. M. (2000) Conservation, regulation, synteny, and introns in a large-scale C. briggsae–C. elegans genomic alignment. Genome Res. 10, 1115– 1125. 43. , Kent, W. , et al. (2004) Aligning multiple genomic sequences with the threaded blockset aligner. Genome Res. 14, 708–715.

10, 950–958. 34. , and Mango, S. E. (2004) Whole-genome analysis of temporal gene expression during foregut development. PLoS Biol. 2, E352. Comparative Genomics 29 35. Kirouac, M. and Sternberg, P. W. (2003) cis-Regulatory control of three cell fatespecific genes in vulval organogenesis of Caenorhabditis elegans and C. briggsae. Dev. Biol. 257, 85–103. 36. , et al. (2003) TRANSFAC: transcriptional regulation, from patterns to profiles. Nucleic Acids Res. 31, 374–378. 37. , Schriefer, L. , Waterston, R.

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